8e5c171ebc3dda33d3c621d6ffec440d *DESCRIPTION
007bccd514f8f035843e3e6f93398725 *NAMESPACE
1449cea6e845186ec36734c071400188 *NEWS.md
2c9e4fea4a99b018e628545ccc4a2541 *R/CorNetto-package.R
95715d5262f4e007a4c0df64afe4da5a *R/candidate-edges.R
124ef6824d6df2d253d1acca9e7e21fa *R/correlation-networks.R
e0e767f146f7c2e8f4ba8d05f4bfda26 *R/differential-correlation.R
b79c694926bd49d517de062d15f6f6e0 *R/example-data.R
5c815992ed75316915948909af9f877e *R/input-data.R
436298252ff4d72f45d3693c80c4c98b *R/knowledge-networks.R
973e948790a4ef308c94e701170fe640 *R/network-graph.R
49b6c5b267104348d5a77add1ec92f48 *R/network-integration.R
c62ab82a8e5bca0d5f89e98e3c30368f *R/permutation-validation.R
7fee1927d991892de7192523bbcbc4bb *R/utils-internal.R
3cfef29982f26f936e14fbefdeaed9ac *README.md
21c9401b8c07f38d762ade4612fc4ffe *build/partial.rdb
de317cf00aa23976388caa59d838ee22 *build/vignette.rds
3054c8cde98257e2c350ebff47489eb8 *inst/CITATION
b2fe3a53f24d5c5ce11b4db4cc077b98 *inst/doc/CorNetto.R
29a58fa0ea0238a2b9ccf0957ba05877 *inst/doc/CorNetto.Rmd
511dc13370f1227a6f9dd87f1eb359e7 *inst/doc/CorNetto.html
75041a26c8d305de5117fa4635051324 *inst/doc/covid-severity-workflow.R
1f0085d00380613c65f516d803558807 *inst/doc/covid-severity-workflow.Rmd
489679f97be4a71a52d7d005af53e282 *inst/doc/covid-severity-workflow.html
e7ab185b57b4f70af5ddc7deea6246ff *inst/extdata/covidData/metaboliteMatrix.csv
92143c3999fd58bcdb895a4aef3cb378 *inst/extdata/covidData/patientInformation.csv
ef35ed8f0603c226c3de6bcdefbc9c03 *inst/extdata/covidData/proteinMatrix.csv
e5e45f8b8f39800751e18d71e5408054 *inst/extdata/covidData/rnaMatrix.csv
88b8fa20065c8a84ec6822e2e2b4361c *inst/extdata/example_knowledge_network.csv
23ffe849d6bb6a9f99cbaffbb0892785 *inst/extdata/example_metabolite_abundance.csv
60c0413ab470e7648f623a1ea70218ad *inst/extdata/example_protein_abundance.csv
52ced68dfbe5dadd816d9f090538d2a9 *inst/extdata/example_sample_data.csv
6d92844be464a13aed75d919f354d66f *inst/extdata/example_seed_nodes.txt
865a4945330920d8bf724d45806ac0d4 *inst/extdata/example_transcript_abundance.csv
9441da3c6f63873f2c2c3a4c8b1e28f7 *inst/extdata/priorNetworks/synthetic_cross_assay.csv
c351a09b417fd8f02ab62ebcbc25a74d *inst/extdata/priorNetworks/synthetic_decoy_edges.csv
593704a4a3e56fc5e7b1bac02ecab2a4 *inst/extdata/priorNetworks/synthetic_within_assay.csv
0e3a621f7c8591490905a2330af5f958 *inst/scripts/covid-example-data.md
06ec553eb659d585577a78e7520b666a *inst/scripts/make-example-data.R
6567be0c6c6fd108ce14412728339f68 *inst/scripts/make-synthetic-priors.R
7eec42e7f74759fd7f1d83eab3df5fc6 *man/CorNetto-package.Rd
a754c3cb1b07fc3a95b7f5221dd9636c *man/calculateRewiringScores.Rd
200739170ba68d838a45d171caba4482 *man/combineKnowledgeNetworks.Rd
64edcc4f34ed244b3459576948d3e3a3 *man/combineNetworks.Rd
0944fa207d0c7bc07106069b0d70d0c7 *man/createAnalysisData.Rd
6798c95ed08c1af4112c4f08a9f6f42c *man/createCorrelationNetwork.Rd
1e991c73d268b6abc9afc0891a003bae *man/createDifferentialCorrelationNetwork.Rd
a9139c89e2077391187c6a86ddd115f3 *man/createFocusedNetwork.Rd
e45edc16ef16a2e9f349d7879bdc20f1 *man/createNetworkGraph.Rd
7912d9f6b63dab3732b3d3512fd4e103 *man/exampleAnalysisData.Rd
838053e4d1e8f9388b4b3e350beb71e8 *man/exampleKnowledgeNetwork.Rd
4ecb32f4ed7a1d60fb1b10d2820e7def *man/exampleSeedNodes.Rd
e6e524925d914b54cfeff865543dcbb0 *man/figures/flowchart.png
cacbac08e48567b060d49122057a8e8a *man/figures/logo.png
49629b1615777d393ff5049836898ee3 *man/filterFeatures.Rd
88b3e6b41bb719e755569ae777516b24 *man/filterNetworkByNodes.Rd
c6042377c97576b4f8c22d857a86b5ea *man/filterSamples.Rd
ff899f8b0a7b0f63591851531e6e39f8 *man/getCorNettoResult.Rd
66de75020c76bf35a145f86ee53f8bcb *man/permuteRewiringScores.Rd
39b8ff0add01bf2788a15dd7260d0e19 *man/plotRewiringScores.Rd
0480c9a7f4f193b0d45ff5845fa48576 *man/prepareCytoscapeTables.Rd
8b413ac9f33f1220ef9decd54f848fda *man/readKnowledgeNetwork.Rd
e9051ec8f2a479d36425c43a00489106 *man/summarizeAnalysisData.Rd
632970eaf475b8c75202e7789051a6c7 *man/summarizeKnowledgeNetwork.Rd
d51cc94f3660632340f3b476797fa999 *man/testDifferentialCorrelation.Rd
6cb7836707e3d2fc2adca54d7b7a3115 *man/validateAnalysisData.Rd
02cb47246b2d1a0abad2346a9b688bb3 *man/validateKnowledgeNetwork.Rd
d0c0544ce3a5599089813cae1e975c1b *man/writeNetworkTables.Rd
b1d919017ea2f2d95edd1a6d9f40ccac *tests/testthat.R
06a1f62b4478408075d3e74f850a3e82 *tests/testthat/helper-internals.R
3a9744db840a289c240e066081fd4636 *tests/testthat/test-correlation-networks.R
c68aef4665fa05a6d2d30b4a4cd56436 *tests/testthat/test-differential-and-rewiring.R
e2c7f23856298a2979bc4fd002db6838 *tests/testthat/test-input-and-knowledge.R
1787551afedc17b8b70de35ee31a2931 *tests/testthat/test-integration-and-graph.R
600e2260b4793d790fc0b2d10c243c2c *tests/testthat/test-statistics.R
29a58fa0ea0238a2b9ccf0957ba05877 *vignettes/CorNetto.Rmd
1f0085d00380613c65f516d803558807 *vignettes/covid-severity-workflow.Rmd
e6e524925d914b54cfeff865543dcbb0 *vignettes/figures/flowchart.png
