BiocSet

This is the development version of BiocSet; for the stable release version, see BiocSet.

Representing Different Biological Sets

Bioconductor version: Development (3.23)

BiocSet displays different biological sets in a triple tibble format. These three tibbles are `element`, `set`, and `elementset`. The user has the abilty to activate one of these three tibbles to perform common functions from the dplyr package. Mapping functionality and accessing web references for elements/sets are also available in BiocSet.

Author: Kayla Morrell [aut, cre], Martin Morgan [aut], Kevin Rue-Albrecht [ctb], Lluís Revilla Sancho [ctb]

Maintainer: Kayla Morrell <kayla.morrell16 at gmail.com>

Citation (from within R, enter citation("BiocSet")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BiocSet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GO, GeneExpression, KEGG, Software
Version	1.25.0
In Bioconductor since	BioC 3.10 (R-3.6) (6 years)
License	Artistic-2.0
Depends	R (>= 3.6), dplyr
Imports	methods, tibble, utils, rlang, plyr, S4Vectors, BiocIO, AnnotationDbi, KEGGREST, ontologyIndex, tidyr
System Requirements
URL

Suggests	GSEABase, airway, org.Hs.eg.db, DESeq2, limma, BiocFileCache, GO.db, testthat, knitr, rmarkdown, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/BiocSet
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BiocSet
Package Short Url	https://bioconductor.org/packages/BiocSet/
Package Downloads Report	Download Stats