# Upstream pre-processing for Sequencing-Based Spatial Transcriptomics

## Documentation for package ‘stPipe’ version 1.3.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

stPipe-package | stPipe: A package for pre-processing sequencing-based spatial transcriptomics data.
Run_Clustering | Perform Basic Clustering Algorithms
Run_Create_Obj | This function creates specified spatial transcriptomics data object for further personalized downstream analysis
Run_HTML | HTML report generation in RMarkDown format
Run_Interactive | Interactive Visualization for Spatial Transcriptomics Data and spot plot with save functionality
Run_Loc_Match | Match spatial location After Pre-Processing for Sequencing-Based Spatial Transcriptomics
Run_QC | QC Control After Upstream Pre-Processing for Sequencing-Based Spatial Transcriptomics
Run_ST | Pre-processing function for sequencing-based spatial transcriptomics
Run_Visualization | Visualize pre-processed sST data
stPipe | stPipe: A package for pre-processing sequencing-based spatial transcriptomics data.