BASiCSEstimate          Estimate BASiCS simulation parameters
BASiCSParams            The BASiCSParams class
BASiCSSimulate          BASiCS simulation
KersplatParams          The KersplatParams class
Lun2Params              The Lun2Params class
LunParams               The LunParams class
Params                  The Params virtual class
PhenoParams             The PhenoParams class
SCDDParams              The SCDDParams class
SimpleParams            The SimpleParams class
SparseDCParams          The SparseDCParams class
SplatParams             The SplatParams class
SplatPopParams          The SplatPopParams class
ZINBParams              The ZINBParams class
addGeneLengths          Add gene lengths
compareSCEs             Compare SingleCellExperiment objects
diffSCEs                Diff SingleCellExperiment objects
getParam                Get a parameter
getParams               Get parameters
kersplatEstimate        Estimate Kersplat simulation parameters
kersplatSample          Kersplat sample
kersplatSetup           Kersplat setup
kersplatSimulate        Kersplat simulation
listSims                List simulations
lun2Estimate            Estimate Lun2 simulation parameters
lun2Simulate            Lun2 simulation
lunEstimate             Estimate Lun simulation parameters
lunSimulate             Lun simulation
makeCompPanel           Make comparison panel
makeDiffPanel           Make difference panel
makeOverallPanel        Make overall panel
minimiseSCE             Minimise SCE
mockBulkMatrix          Generate mock bulk population scale expression
                        data
mockBulkeQTL            Generate mock eQTL mapping results
mockEmpiricalSet        Generate set of "empirical" mock data
mockGFF                 Generate mock gff
mockVCF                 Generate mock vcf
newParams               New Params
phenoEstimate           Estimate PhenoPath simulation parameters
phenoSimulate           PhenoPath simulation
scDDEstimate            Estimate scDD simulation parameters
scDDSimulate            scDD simulation
setParam                Set a parameter
setParams               Set parameters
simpleEstimate          Estimate simple simulation parameters
simpleSimulate          Simple simulation
sparseDCEstimate        Estimate SparseDC simulation parameters
sparseDCSimulate        SparseDC simulation
splatEstimate           Estimate Splat simulation parameters
splatPopEstimate        Estimate population/eQTL simulation parameters
splatPopParseEmpirical
                        splatPopParseEmpirical
splatPopQuantNorm       Quantile normalize by sample to fit sc
                        expression distribution.
splatPopSimulate        splatPop simulation
splatPopSimulateMeans   splatPopSimulateMeans
splatPopSimulateSC      splatPopSimulateSC
splatSimulate           Splat simulation
summariseDiff           Summarise diffSCEs
zinbEstimate            Estimate ZINB-WaVE simulation parameters
zinbSimulate            ZINB-WaVE simulation
