add_missing_psb_rows	add_missing_psb_rows
asmbPLSDA.cv.kcv	asmbPLSDA.cv.kcv
asmbPLSDA.cv.loo	asmbPLSDA.cv.loo
biological_link_function	biological_link_function
calculate_pvalues	helpers
celltype_mapping	celltype_mapping
celltype_recap	celltype_recap
center_scale	helpers
check_fit_model	check_fit_model
check_hyperparameters	check_hyperparameters
check_mapping_organism	check_mapping_organism
check_pathway	check_pathway
check_superpathway	check_superpathway
check_superpathway_input	check_superpathway_input
CIP_GIP	CIP_GIP
CIP_GIP_test	CIP_GIP_test
clean_mfa_data	clean_mfa_data
compute_final_measures	helpers
compute_IC95	helpers
compute_permutation_stats	helpers
compute_pvalue	helpers
compute_validation_metrics	helpers
create_fit_model	create_fit_model
create_hyperparameters	create_hyperparameters
create_mapping_organism	create_mapping_organism
create_pathway	create_pathway
create_superpathway	create_superpathway
create_superpathway_input	create_superpathway_input
deflate_prediction	helpers
derive_contributions	derive_contributions
derive_scores	derive_scores
detect_gene_type	helpers
diff_expressed	diff_expressed
evaluate_performance	helpers
evaluate_quantile_combinations	helpers
execute_parallel_cv	helpers
execute_sequential_cv	helpers
FCtoExpression	helpers
fitOptimal	fitOptimal
fit_mfa_imputer	fit_mfa_imputer
fit_permuted_model	helpers
generate_null_distributions	helpers
gene_contrib	gene_contrib
get_indices	helpers
get_measure_index	helpers
get_train_val_sets	helpers
helpers	helpers
initialize_results	helpers
jackknife_CIP_GIP	helpers
matrixToBlock	matrixToBlock-method
multiple_check	multiple_check
multiple_fitOptimal	multiple_fitOptimal
multiple_singISTrecapitulations	multiple_singISTrecapitulations
orthology_mapping	orthology_mapping
performance_measures	helpers
perform_cv	helpers
permute_X_matrix	helpers
permute_Y_matrix	helpers
permut_asmbplsda	permut_asmbplsda
permut_asmbplsda_kcv	permut_asmbplsda_kcv
predict_mfa_imputer	predict_mfa_imputer
pullGeneSet	pullGeneSet
quantile_computation	helpers
render_multiple_outputs	render_multiple_outputs
restore_removed_columns	restore_removed_columns
Results_comparison_measure	Results_comparison_measure
retrieve_one2one_orthologs	helpers
select_optimal_PLS	helpers
select_samples	helpers
setGeneSetsCelltype	setGeneSetsCelltype
singISTrecapitulations	singISTrecapitulations
singIST_treat	singIST_treat
subsampling_CIP_GIP	helpers
superpathway_recap	superpathway_recap
update_block	helpers
update_group_sizes	update_group_sizes
wilcox_CIP_GIP	wilcox_CIP_GIP
