Package: simpleSeg
Type: Package
Title: A package to perform simple cell segmentation
Description: Image segmentation is the process of identifying the
        borders of individual objects (in this case cells) within an
        image. This allows for the features of cells such as marker
        expression and morphology to be extracted, stored and analysed.
        simpleSeg provides functionality for user friendly, watershed
        based segmentation on multiplexed cellular images in R based on
        the intensity of user specified protein marker channels.
        simpleSeg can also be used for the normalization of single cell
        data obtained from multiple images.
Version: 1.15.0
Date: 2022-04-21
Authors@R: c(person("Nicolas", "Canete", email = "nicolas.canete@sydney.edu.au",
    role = c("aut")),
    person("Alexander", "Nicholls", email = "alexanderwnicholls@gmail.com",
    role = c("aut")),
    person("Ellis", "Patrick", email = "ellis.patrick@sydney.edu.au",
    role = c("aut", "cre")))
VignetteBuilder: knitr
Encoding: UTF-8
biocViews: Classification, Survival, SingleCell, Normalization, Spatial
Imports: BiocParallel, EBImage, terra, stats, spatstat.geom, S4Vectors,
        grDevices, SummarizedExperiment, methods, cytomapper
Suggests: BiocStyle, testthat (>= 3.0.0), knitr, ggplot2
License: GPL-3
RoxygenNote: 7.2.3
Config/testthat/edition: 3
BugReports: https://github.com/SydneyBioX/simpleSeg/issues
URL: https://sydneybiox.github.io/simpleSeg/
        https://github.com/SydneyBioX/simpleSeg
Config/pak/sysreqs: cmake libfftw3-dev libfontconfig1-dev
        libfreetype6-dev libfribidi-dev libgdal-dev gdal-bin
        libgeos-dev make libharfbuzz-dev libmagick++-dev gsfonts
        libicu-dev libjpeg-dev libpng-dev libtiff-dev libuv1-dev
        libssl-dev libproj-dev libsqlite3-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:59:20 UTC
RemoteUrl: https://github.com/bioc/simpleSeg
RemoteRef: HEAD
RemoteSha: 446373ed65f578795922997bc3b09ab4bcda50e0
NeedsCompilation: no
Packaged: 2026-05-30 09:40:16 UTC; root
Author: Nicolas Canete [aut],
  Alexander Nicholls [aut],
  Ellis Patrick [aut, cre]
Maintainer: Ellis Patrick <ellis.patrick@sydney.edu.au>
Depends: R (>= 3.5.0)
Built: R 4.6.0; ; 2026-05-30 10:02:36 UTC; windows
