# Metrics to estimate a level of similarity between two ChIP-Seq profiles

## Documentation for package ‘similaRpeak’ version 1.45.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

similaRpeak-package | similaRpeak: Metrics to estimate a level of similarity between two ChIP-Seq profiles
chr7Profiles | ChIP-Seq profiles of region chr7:61968807-61969730 related to enhancers H3K27ac and H3K4me1 (for demonstration purpose)
demoProfiles | ChIP-Seq profiles of region chr7:61968807-61969730 related to enhancers H3K27ac and H3K4me1 (for demonstration purpose)
DiffPosMax | DiffPosMax class
diffPosMaxMethod | Difference between two profiles maximal peaks positions
Metric | Metric class
MetricFactory | MetricFactory object
RatioArea | RatioArea class
ratioAreaMethod | Ratio of profiles area between two profiles
RatioIntersect | RatioIntersect class
ratioIntersectMethod | Ratio between the intersection area of two profiles and the total area covered by those profiles
RatioMaxMax | RatioMaxMax class
ratioMaxMaxMethod | Ratio of profiles maximal peaks between two profiles
RatioNormalizedIntersect | RatioNormalizedIntersect class
similarity | Calculate metrics which estimate the level of similarity between two ChIP-Seq profiles
similaRpeak | similaRpeak: Metrics to estimate a level of similarity between two ChIP-Seq profiles
SpearmanCorrelation | SpearmanCorrelation class
spearmanCorrMethod | Spearman's rho statistic of two profiles