# Benchmarks for RNA-seq Quantification Pipelines

## Documentation for package ‘rnaseqcomp’ version 1.43.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

check_rnaseqcomp | Sanity Check of S4 rnaseqcomp Class
plot2TX | Estimate And Plot Transcript Proportion Difference
plotFC | Estimate And Plot Fold Change Accuracy
plotNE | Estimate And Plot Express And Non-express Features
plotROC | Estimate And Plot Differential Expression
plotSD | Estimate And Plot Median Standard Deviation
rnaseqcomp-class | rnaseqcomp
signalCalibrate | Quantification Filtering And Calibration
simdata | Example of Quantifications on Simulation Data