citHeader("To cite package 'pRoloc' in publications use:")

citEntry(entry = "article",
         title = "Mass-spectrometry based spatial proteomics data analysis using pRoloc and pRolocdata",
         author = personList(
             as.person("Laurent Gatto"),
             as.person("Lisa M. Breckels"),
             as.person("Samuel Wieczorek"),
             as.person("Thomas Burger"),
             as.person("Kathryn S. Lilley")),
         journal = "Bioinformatics",
         year = "2014",
         textVersion =
             paste("Gatto L, Breckels LM, Wieczorek S, Burger T, Lilley KS.",
                   "Mass-spectrometry-based spatial proteomics data analysis using pRoloc",
                   "and pRolocdata. Bioinformatics. 2014 May 1;30(9):1322-4.",
                   "doi:10.1093/bioinformatics/btu013. Epub 2014 Jan 11.",
                   "PubMed PMID: 24413670; PubMed Central PMCID: PMC3998135.")
         )


citEntry(entry = "article",
         title = "The effect of organelle discovery upon sub-cellular protein localisation",
         author = personList(
             as.person("Lisa M. Breckels"),
             as.person("Laurent Gatto"),
             as.person("Andy Christoforou"),
             as.person("Arnoud J. Groen"),
             as.person("Kathryn S. Lilley"),
             as.person("Matthew W. Trotter")),
         journal = "J Proteomics",
         year = "2013",
         textVersion =
         paste0("Breckels LM, Gatto L, Christoforou A, Groen AJ, Lilley KS, Trotter MW. ",
                "The effect of organelle discovery upon sub-cellular protein localisation. ",
                "J Proteomics. 2013 Mar 21. doi:pii: S1874-3919(13)00094-8. ",
                "10.1016/j.jprot.2013.02.019. PubMed PMID: 23523639.")
         )


citEntry(entry = "article",
         title = "A foundation for reliable spatial proteomics data analysis",
         author = personList(
             as.person("Laurent Gatto"),
             as.person("Lisa M. Breckels"),
             as.person("Thomas Burger"),
             as.person("Daniel J. Nightingale"),
             as.person("Arnoud J. Groen"),
             as.person("Callum Campbell"),
             as.person("Claire M. Mulvey"),
             as.person("Andy Christroforou"),
             as.person("Myriam Ferro"),
             as.person("Kathryn S. Lilley")),
         journal = "Mol Cell Proteomics",
         year = "2014",
         textVersion =
         paste("Gatto L., Breckels L.M., Burger T, Nightingale D.J.H., Groen A.J., Campbell C.,",
               "Mulvey C.M., Christoforou A., Ferro M., Lilley K.S.",
               "'A foundation for reliable spatial proteomics data analysis'",
               "Mol Cell Proteomics. 2014 May 20.")
         )

citEntry(entry = "article",
         title = "Learning from heterogeneous data sources: an application in spatial proteomics",
         author = personList(
             as.person("Lisa M. Breckels"),
             as.person("Sean Holden"),
             as.person("David Wonjar"),
             as.person("Claire M. Mulvey"),
             as.person("Andy Christoforou"),
             as.person("Arnoud Groen"),
             as.person("Matthew W.B. Trotter"),
             as.person("Oliver Kohlbacker"),
             as.person("Kathryn S. Lilley"),
             as.person("Laurent Gatto")
             ),
         journal = "PLoS Comput Biol",
         year = "2016",
         textVersion =
             paste("Breckels LM, Holden SB, Wojnar D, Mulvey CM, Christoforou A, Groen A, Trotter MW",
                   "Kohlbacher O, Lilley KS, Gatto L. Learning from Heterogeneous Data Sources:",
                   "An Application in Spatial Proteomics. PLoS Comput Biol. 2016 May",
                   "13;12(5):e1004920. doi: 10.1371/journal.pcbi.1004920. "))



citEntry(entry = "article",
         title = "A Bioconductor workflow for the Bayesian analysis of spatial proteomics",
         author = personList(
             as.person("Oliver M. Crook"),
             as.person("Lisa M. Breckels"),
             as.person("Kathryn S. Lilley"),
             as.person("Paul D.W. Kirk"),
             as.person("Laurent Gatto")
             ),
         journal = "F1000Research",
         year = "2019",
         textVersion =
             paste("Crook OM, Breckels LM, Lilley KS, Kirk PWD, Gatto L.",
                   "A Bioconductor workflow for the Bayesian analysis of spatial proteomics",
                   "[version 1; peer review: awaiting peer review].",
                   "F1000Research 2019, 8:446 (https://doi.org/10.12688/f1000research.18636.1) "))
                   
                   
citEntry(entry = "article",
         title = "An updated Bioconductor workflow for correlation profiling subcellular proteomics",
         author = personList(
             as.person("Charlotte Hutchings"),
             as.person("Thomas Krueger"),
             as.person("Oliver M. Crook"),
             as.person("Laurent Gatto"),
             as.person("Kathryn S. Lilley"),
             as.person("Lisa M. Breckels")
             ),
         journal = "F1000Research",
         year = "2025",
         textVersion =
             paste("Hutchings C, Krueger T, Crook OM, Gatto L, Lilley KS, Breckels LM.",
             "An updated Bioconductor workflow for correlation profiling subcellular proteomics",
             "[version 1; peer review: 3 approved].", 
             "F1000Research 2025, 14:714 (https://doi.org/10.12688/f1000research.165543.1)"))