760eadd0e6e2f12b823a131c8aa7ac2f *CITATION
5480b9f3b8dea28c9d762328b0ab2cb6 *DESCRIPTION
e158a26a6f3676f282298f59b8aa1c16 *INDEX
374f05e18b97bbe552267dc3a99c61a9 *Meta/Rd.rds
8bd78fe4d71c3aeb1a0f4982ee51622b *Meta/features.rds
cbff8b93a2c61997b8e42268f4dc7aca *Meta/hsearch.rds
17abad7c5a35658ac577819554c81d50 *Meta/links.rds
b413b06095d08aac9d70d157a45bdef4 *Meta/nsInfo.rds
1a50dbe184e06bf9270062a523a95079 *Meta/package.rds
b24286972e8b340027e37824f39c6a82 *Meta/vignette.rds
43e7ba3ccbf67642a22429bcbdd50f25 *NAMESPACE
9058328dd4517a090fb65b41b0539fdd *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/epialleleR
c9b6d478dcb6fa6fd6d37c1a99368d0e *R/epialleleR.rdb
c87e95609c00d9645f5b8dec903aca0c *R/epialleleR.rdx
2fb5ae236c9555e341699e9f4d4ce109 *README.md
ca851f33f8eabaac5dd2d1820d3b5253 *doc/epialleleR.R
9003ef5a29e2b9964deb11dc9ca0aee6 *doc/epialleleR.Rmd
c02cb5767f45044ad4b9e8b2dec4e8da *doc/epialleleR.html
1e160b038b91832ecedec3672bfc256b *doc/index.html
7eed7238643e7f72b905223c93a98063 *doc/values.R
7acf39369eb00556a0251f12f4ccdd86 *doc/values.Rmd
b667724244097ea225014cf172c77ae7 *doc/values.html
58f833017ad83577c148c2c1e597e132 *extdata/amplicon.bed
b021a04d94a76e4d8609419f929d177b *extdata/amplicon.vcf.gz
fb65422720c8a20dd52b4cb349319df5 *extdata/amplicon.vcf.gz.tbi
08f6f073a2b915f0cce062b75daa8c39 *extdata/amplicon000meth.bam
8a9175527138cb03e08ccbb5eb1be447 *extdata/amplicon010meth.bam
5090d9f275a998bf55b41295e3a9a97a *extdata/amplicon100meth.bam
532c9c5addb7bb3edd980fbe8c51d680 *extdata/capture.bam
8238372c018ccbc0466a6f724fbaa479 *extdata/capture.bed
152066bcc0d8b507efea3a5ae073c000 *extdata/capture.vcf.gz
f0b16c21dcc3c8d56799294862c6c3d7 *extdata/capture.vcf.gz.tbi
33b29026ee19c7d8720719d9e8b70c52 *extdata/longread.bam
eedee46794a999f6f590821b6f428021 *extdata/test/bsmap-pe-namesort-zs.bam
56f6d441dd87609b5199cae6f23dd38b *extdata/test/bsmap-pe-unsort-zs.bam
51e64e3834bfbd4cb8f63bcef10742f9 *extdata/test/bsmap-se-unsort-zs.bam
c730ae0b3d9e8e2c17fa5451286fcfe3 *extdata/test/bwameth-pe-namesort-yd.bam
39b3fe1f5a4caee160fdff98e42a7dec *extdata/test/bwameth-pe-unsort-yd.bam
59ea2d42f1d52689ba1c46a32c073de2 *extdata/test/bwameth-se-unsort-yd.bam
3bd4de272359f2ac18d2e5550a5b69c6 *extdata/test/bwameth-se-unsort.bam
ea45fdb271bd7d05ba62784f111818f2 *extdata/test/dragen-pe-namesort-xg-xm.bam
50bb3ae5e6a6917cbe29b1e3a8011e18 *extdata/test/dragen-pe-namesort-xg.bam
30bbb6967b8566d660e5c165e0673095 *extdata/test/dragen-pe-unsort-xg-xm.bam
e42654051562b1d37a3a881290361d1a *extdata/test/dragen-pe-unsort-xg.bam
bc5d756188832c02da88a55e5c969ee1 *extdata/test/dragen-pe.CX_report.txt.gz
f27b657a8644b7a190758d569a7134ca *extdata/test/dragen-se-unsort-xg-xm.bam
b970b667e937f219c1037bd223174c6c *extdata/test/dragen-se-unsort-xg.bam
958b1ce872a2853895c3b475eddf5815 *extdata/test/dragen-se.CX_report.txt.gz
7f81afe3a9442594661d37749f32d9b5 *extdata/test/empty.bam
50c39c99240cbde64a078c5141b7bd25 *extdata/test/reference.fasta.gz
7c064ec257d0c934b8715dd7b2ff4973 *extdata/test/reference.fasta.gz.fai
7dea362b3fac8e00956a4952a3d4f474 *extdata/test/reference.fasta.gz.gzi
7966570ddba8e7e49f9d4aab73787afc *help/AnIndex
d821085572d465db89ae6e401f06ef5c *help/aliases.rds
4cb23e3cb9d4daee9b7588be9edff0cc *help/epialleleR.rdb
705f59331df919e250248e03c260f3da *help/epialleleR.rdx
f72c5a95754f033c2ae8ec32d4fd414d *help/paths.rds
2823c174293302a72e2e04d87275b1ea *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
d32549d9dd49070d8bb4a17f3ed67107 *libs/x64/epialleleR.dll
20d654f501889ff339002fd7a6394fec *libs/x64/symbols.rds
c6488bb9ece988cdd1ae8e7a8a46f5b5 *unitTests/test_callMethylation.R
85652f1a461433aaa354591e0f801cea *unitTests/test_extractPatterns.R
7d58c77c7a24dcf649b5c367c7c2cb5c *unitTests/test_generateBedEcdf.R
620e5821ff4df91c57218ee80923be3e *unitTests/test_generateBedReport.R
348fd1fc756857aa7e058e0a79f8e360 *unitTests/test_generateCytosineReport.R
f77c7c2f30907f6d05e1a8ac30b3047e *unitTests/test_generateMhlReport.R
158c1157e9ab7ce6b810ca33c5915c47 *unitTests/test_generateVcfReport.R
3c5a0a9b2910244bee495afd52267c32 *unitTests/test_internals.R
2828c778c4a87a848156c0928ecc005e *unitTests/test_plotPatterns.R
e0b79e9ca015cc7614142e4b4181d6be *unitTests/test_preprocessBam.R
8211b224e9c7328761b03b5e2b548a50 *unitTests/test_preprocessGenome.R
b74fa5f432d9faf62cca3f1580efbf8e *unitTests/test_simulateBam.R
