Package: doseR
Type: Package
Title: doseR
Version: 1.29.0
Author: AJ Vaestermark, JR Walters.
Maintainer: ake.vastermark <ake.vastermark@gmail.com>
Description: doseR package is a next generation sequencing package for
        sex chromosome dosage compensation which can be applied broadly
        to detect shifts in gene expression among an arbitrary number
        of pre-defined groups of loci. doseR is a differential gene
        expression package for count data, that detects directional
        shifts in expression for multiple, specific subsets of genes,
        broad utility in systems biology research. doseR has been
        prepared to manage the nature of the data and the desired set
        of inferences. doseR uses S4 classes to store count data from
        sequencing experiment. It contains functions to normalize and
        filter count data, as well as to plot and calculate statistics
        of count data. It contains a framework for linear modeling of
        count data. The package has been tested using real and
        simulated data.
License: GPL
Encoding: UTF-8
RoxygenNote: 6.1.1
Imports: edgeR, methods, stats, graphics, matrixStats, mclust, lme4,
        RUnit, SummarizedExperiment, digest, S4Vectors
Suggests: BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr
biocViews: Infrastructure, Software, DataRepresentation, Sequencing,
        GeneExpression, SystemsBiology, DifferentialExpression
Depends: R (>= 3.6)
Config/pak/sysreqs: cmake make zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:49:38 UTC
RemoteUrl: https://github.com/bioc/doseR
RemoteRef: HEAD
RemoteSha: 7a89dcbd1e35c50ff1885d0eca099282cd915188
NeedsCompilation: no
Packaged: 2026-05-04 09:10:30 UTC; root
Built: R 4.6.0; ; 2026-05-04 09:12:29 UTC; windows
