Package: combi
Type: Package
Title: Compositional omics model based visual integration
Version: 1.25.0
Authors@R: 
    c(person(given = "Stijn", family = "Hawinkel", 
    email = "stijn.hawinkel@psb.ugent.be", 
    role=c("cre", "aut"), comment = c(ORCID = "0000-0002-4501-5180")))
Description: This explorative ordination method combines
        quasi-likelihood estimation, compositional regression models
        and latent variable models for integrative visualization of
        several omics datasets. Both unconstrained and constrained
        integration are available. The results are shown as
        interpretable, compositional multiplots.
License: GPL-2
Encoding: UTF-8
Depends: R (>= 4.0), DBI
RoxygenNote: 7.2.3
Imports: ggplot2, nleqslv, phyloseq, tensor, stats, limma, Matrix (>=
        1.6.0), BB, reshape2, alabama, cobs, Biobase, vegan, grDevices,
        graphics, methods, SummarizedExperiment
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
biocViews: Metagenomics, DimensionReduction, Microbiome, Visualization,
        Metabolomics
BugReports: https://github.com/CenterForStatistics-UGent/combi/issues
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:52:10 UTC
RemoteUrl: https://github.com/bioc/combi
RemoteRef: HEAD
RemoteSha: e8311756e4d7fcc6b9efeae214c226aa80c88f5d
NeedsCompilation: no
Packaged: 2026-05-30 08:45:39 UTC; root
Author: Stijn Hawinkel [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-4501-5180>)
Maintainer: Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>
Built: R 4.6.0; ; 2026-05-30 08:47:22 UTC; windows
