StatescopeR framework for discovery of cell states from cell
type-specific gene expression profiles inferred from bulk mRNA
profiles
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Documentation for package ‘StatescopeR’ version 0.99.34
Help Pages
| autogenes | Python environments |
| barplot_stateloadings | Create a barplot of top stateloadings |
| BLADE_deconvolution | Run BLADE deconvolution |
| create_signature | Create scRNAseq Signature |
| fetch_signature | Fetch scRNAseq Signature |
| fraction_eval | Create a barplot of TRUE vs estimated cfs |
| fraction_heatmap | Create a heatmap of the estimated fractions |
| gather_true_fractions | Gather true fractions |
| Refinement | Run Refinement |
| select_genes | Select genes using AutoGeneS |
| StateDiscovery | Run StateDiscovery |