addOrthProjection	addOrthProjection
arrayprod	arrayprod
buildCentMat	buildCentMat
buildConfMat	buildConfMat
buildConfMat,character-method	buildConfMat-character-method
buildConfMat,data.frame-method	buildConfMat-data.frame-method
buildCovMat	buildCovMat
buildDesign	buildDesign
checkAlias	checkAlias
constrCorresp	constrCorresp
correctXMissingness	correctXMissingness
deviances	deviances
dLR_nb	dLR_nb
dNBabundsOld	dNBabundsOld
dNBlibSizes	dNBlibSizes
dNBllcolNP	dNBllcolNP
dNBllcolOld	dNBllcolOld
dNBllcol_constr	dNBllcol_constr
dNBllcol_constr_noLab	dNBllcol_constr_noLab
dNBllrow	dNBllrow
dNBpsis	dNBpsis
ellipseCoord	ellipseCoord
estDisp	estDisp
estNBparams	estNBparams
estNBparamsNoLab	estNBparamsNoLab
estNPresp	estNPresp
extractCoord	extractCoord
extractE	extractE
filterConfounders	filterConfounders
getDevianceRes	getDevianceRes
getDevMat	getDevMat
getDistCoord	getDistCoord
getInflCol	getInflCol
getInflRow	getInflRow
getInt	getInt
getLogLik	getLogLik
getModelMat	getModelMat
getRowMat	getRowMat
GramSchmidt	GramSchmidt
heq_nb	heq_nb
heq_nb_jac	heq_nb_jac
indentPlot	indentPlot
inertia	inertia
JacCol_constr	JacCol_constr
JacCol_constr_noLab	JacCol_constr_noLab
liks	liks
LR_nb	LR_nb
LR_nb_Jac	LR_nb_Jac
NBalphaInfl	NBalphaInfl
NBcolInfl	NBcolInfl
NBjacobianAbundsOld	NBjacobianAbundsOld
NBjacobianColNP	NBjacobianColNP
NBjacobianColOld	NBjacobianColOld
NBjacobianLibSizes	NBjacobianLibSizes
NBjacobianPsi	NBjacobianPsi
NBjacobianRow	NBjacobianRow
NBpsiInfl	NBpsiInfl
NBrowInfl	NBrowInfl
permanova	permanova
plot.RCM	plot.RCM
plotRespFun	plotRespFun
RCM	RCM
RCM,matrix-method	RCM
RCM,phyloseq-method	RCM
RCM_NB	RCM_NB
residualPlot	residualPlot
respFunJacMat	respFunJacMat
respFunScoreMat	respFunScoreMat
rowMultiply	rowMultiply
seq_k	seq_k
trimOnConfounders	trimOnConfounders
Zeller	Zeller
