Package: RBPSpecificity
Type: Package
Title: RBP Inherent Specificity and Variation Sensitivity Analysis Tool
Version: 0.99.6
Description: Provides tools to analyze RNA Binding Protein (RBP)
        binding specificities from high-throughput sequencing data.
        Functions include calculating K-mer enrichment, Inherent
        Specificity (IS), and Mutational Sensitivity (VS), along with
        visualization of IS and VS. For detailed methodology and
        applications, please refer to our manuscript (see URL field or
        vignette).
License: GPL-3
Encoding: UTF-8
biocViews: Software, MotifAnnotation, Sequencing, Coverage,
        GenomeAnnotation, Visualization, GeneRegulation, KEGG
BugReports: https://github.com/S00NYI/RBPSpecificity/issues
URL: https://www.biorxiv.org/content/10.1101/2025.03.28.646018v2,
        https://github.com/S00NYI/RBPSpecificity,
        https://github.com/S00NYI/BITS_Specificity
Authors@R: 
    c(person("Soon", "Yi", , "cu.soonyi@gmail.com", role = c("aut", "cre"),
             comment = c(ORCID = "0000-0002-4535-6532")),
      person("National Institutes of Health", role = "fnd", comment = "T32 GM152319"))
Depends: R (>= 4.5.0)
Imports: Biostrings, BSgenome, GenomeInfoDb, GenomicRanges, ggplot2,
        methods, reshape2, S4Vectors, stats, utils
Suggests: BiocStyle, BSgenome.Hsapiens.UCSC.hg38, IRanges, knitr,
        rmarkdown, testthat
VignetteBuilder: knitr
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-07-19 01:16:56 UTC
RemoteUrl: https://github.com/bioc/RBPSpecificity
RemoteRef: HEAD
RemoteSha: e1b8712b78890e3dc3299ab7f9a074b7adc35431
NeedsCompilation: no
Packaged: 2026-07-22 10:50:50 UTC; root
Author: Soon Yi [aut, cre] (ORCID: <https://orcid.org/0000-0002-4535-6532>),
  National Institutes of Health [fnd] (T32 GM152319)
Maintainer: Soon Yi <cu.soonyi@gmail.com>
Built: R 4.6.1; ; 2026-07-22 10:55:19 UTC; windows
