batchAdjust             Adjust microarray data for batch effects.
batchFilter             Remove differential features regarding array
                        batches/lots.
batchFilter.anova       Remove features which are differential
                        regarding microarray batches / lots in a
                        multi-batch scenario.
diffAnalysis            Differential analysis.
loadGPR                 Importing raw data from gpr files.
mMsMatrix               Compute a reference minimum M statistic (n1 x
                        n2)-matrix.
normalizeArrays         Normalize microarray data.
plotArray               Plot ProtoArray expression intensities in the
                        original arrangement mimicking the original
                        scan image.
plotFeatures            Plot intensities of features.
plotFeaturesHeatmap     Plot feature intensities as a heatmap.
plotFeaturesHeatmap.2   Alternative function to plot feature
                        intensities as a heatmap.
plotMAPlots             Check normalization results with MA plots.
plotNormMethods         Check normalization results with boxplots.
preselect               Score and preselect features.
printFeatures           Print features into a table.
pvaluePlot              Draw a p-value plot.
selectFeatures          Select features using frequency-based or
                        ensemble feature selection.
shuffleData             Shuffles class labels to obtain random groups.
volcanoPlot             Draw a volcano plot.
