Package: HMMcopy
Type: Package
Title: Copy number prediction with correction for GC and mappability
        bias for HTS data
Version: 1.55.1
Date: 2021-11-22
Author: Daniel Lai, Gavin Ha, Sohrab Shah
Maintainer: Andrew McPherson <andrew.mcpherson@gmail.com>
Import: data.table
Depends: R (>= 2.10.0), data.table (>= 1.11.8)
Description: Corrects GC and mappability biases for readcounts (i.e.
        coverage) in non-overlapping windows of fixed length for single
        whole genome samples, yielding a rough estimate of copy number
        for furthur analysis.  Designed for rapid correction of high
        coverage whole genome tumour and normal samples.
License: GPL-3
biocViews: Sequencing, Preprocessing, Visualization,
        CopyNumberVariation, Microarray
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-29 12:02:41 UTC
RemoteUrl: https://github.com/bioc/HMMcopy
RemoteRef: HEAD
RemoteSha: 0c9a92e4a0f3ff937a637f0b7c38ae0b65802fac
NeedsCompilation: yes
Packaged: 2026-05-29 16:45:10 UTC; root
Built: R 4.6.0; x86_64-w64-mingw32; 2026-05-29 16:46:24 UTC; windows
Archs: x64
