# GO-terms Semantic Similarity Measures

## Documentation for package ‘GOSemSim’ version 2.39.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

buildGOmap | buildGOmap
clusterSim | Semantic similarity between two gene clusters
combineScores | combining similarity matrix to similarity score
geneSim | Semantic similarity between two genes
get_organism | Get organism name from OrgDb object
GO | Information content of GO terms
godata | godata
GOSemSimDATA-class | Class "GOSemSimDATA" This class stores IC and gene to go mapping for semantic similarity measurement
goSim | Semantic similarity between two GO terms
gotbl | Information content of GO terms
go_term_table | Information content of GO terms
infoContentMethod | information content based methods
mclusterSim | Pairwise semantic similarities for a list of gene clusters
mgeneSim | Pairwise semantic similarity for a list of genes
mgoSim | Semantic similarity between two GO term sets
parse_gff | read.gaf
read.blast2go | read.blast2go
read.gaf | read.gaf
set_auto_update | Control auto-update of ontology databases
show-method | Class "GOSemSimDATA" This class stores IC and gene to go mapping for semantic similarity measurement
tcss_cutoff | determine the topological cutoff for TCSS method
termSim | termSim
wangMethod_internal | wangMethod