Package: GEOquery
Type: Package
Title: Get data from NCBI Gene Expression Omnibus (GEO)
Version: 2.81.28
Date: 2026-07-17
Authors@R: 
  c(person(given = "Sean",
           family = "Davis",
           role = c("aut", "cre"),
           email = "seandavi@gmail.com",
           comment = c(ORCID = "0000-0002-8991-6458")))
BugReports: https://github.com/seandavi/GEOquery/issues/new
Depends: R (>= 4.1.0), methods, Biobase
Imports: readr (>= 1.3.1), xml2, dplyr, data.table, tidyr, magrittr,
        limma, curl, rentrez, R.utils, stringr, SummarizedExperiment,
        S4Vectors, rvest, httr2, rlang, BiocFileCache
Suggests: knitr, rmarkdown, BiocGenerics, testthat, covr, markdown,
        quarto, SingleCellExperiment, TENxIO, anndataR, BiocIO, Seurat
VignetteBuilder: quarto
URL: https://github.com/seandavi/GEOquery,
        http://seandavi.github.io/GEOquery,
        http://seandavi.github.io/GEOquery/
biocViews: GeneExpression, Transcriptomics, Microarray, RNASeq,
        Sequencing, SingleCell, DataImport, ThirdPartyClient,
        OneChannel, TwoChannel, SAGE
Description: The NCBI Gene Expression Omnibus (GEO) is a public
        repository of high-throughput functional genomics data,
        including microarray, RNA-seq, and single-cell experiments.
        GEOquery is the bridge between GEO and Bioconductor: it
        downloads and parses GEO Series (GSE), Sample (GSM), Platform
        (GPL), and DataSet (GDS) records. By default it parses GEO
        Series Matrix files into Bioconductor 'ExpressionSet' objects;
        it can also parse the full SOFT format into GEOquery's own S4
        classes, retrieve NCBI-computed RNA-seq quantifications,
        download supplementary files, and search GEO.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libicu-dev libxml2-dev libssl-dev libx11-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-07-18 02:12:33 UTC
RemoteUrl: https://github.com/bioc/GEOquery
RemoteRef: HEAD
RemoteSha: 504d4d30a8272c3a3dc9c29cbae07e4950547346
NeedsCompilation: no
Packaged: 2026-07-18 04:40:24 UTC; root
Author: Sean Davis [aut, cre] (ORCID: <https://orcid.org/0000-0002-8991-6458>)
Maintainer: Sean Davis <seandavi@gmail.com>
Built: R 4.6.1; ; 2026-07-18 04:43:11 UTC; windows
