# Interactive Workflow for Discovering Rhythmicity in Biological Data

## Documentation for package ‘DiscoRhythm’ version 1.29.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

discoApp | Launch the DiscoRhythm Shiny Application
discoBatch | Core DiscoRhythm Workflow
discoCheckInput | Import Data for DiscoRhythm Analysis
discoDesignSummary | Summarize the experimental design
discoDFtoSE | Data formatting for DiscoRhythm
discoGetODAs | Execute Oscillation Detection Using DiscoRhythm
discoGetSimu | Read in the DiscoRhythm Simulated dataset
discoInterCorOutliers | Quality Control for DiscoRhythm
discoODAexclusionMatrix | Algorithm Exclusion Matrix
discoODAid2name | Mapping Identifiers to Full Names
discoODAs | Execute Oscillation Detection Using DiscoRhythm
discoParseMeta | Generate Experiment Metadata
discoPCA | Perform PCA
discoPCAoutliers | Quality Control for DiscoRhythm
discoPeriodDetection | Detect dataset-wide fits to multiple periodicities
discoQC | Quality Control for DiscoRhythm
discoRepAnalysis | Quality Control for DiscoRhythm
discoSEtoDF | Data formatting for DiscoRhythm