Package: CHETAH
Title: Fast and accurate scRNA-seq cell type identification
Type: Package
Version: 1.29.0
Date: 2025-10-14
Authors@R: c(person("Jurrian", "de Kanter", email = "jurriandekanter@gmail.com",  role = c("aut", "cre")),
             person("Philip", "Lijnzaad", email = "p.lijnzaad@prinsesmaximacentrum.nl", role = c("aut")))
Description: CHETAH (CHaracterization of cEll Types Aided by
        Hierarchical classification) is an accurate, selective and fast
        scRNA-seq classifier. Classification is guided by a reference
        dataset, preferentially also a scRNA-seq dataset. By
        hierarchical clustering of the reference data, CHETAH creates a
        classification tree that enables a step-wise, top-to-bottom
        classification. Using a novel stopping rule, CHETAH classifies
        the input cells to the cell types of the references and to
        "intermediate types": more general classifications that ended
        in an intermediate node of the tree.
Imports: shiny, plotly, pheatmap, bioDist, dendextend, cowplot,
        corrplot, grDevices, stats, graphics, reshape2, S4Vectors,
        SummarizedExperiment
Depends: R (>= 4.2), ggplot2, SingleCellExperiment
License: file LICENSE
Encoding: UTF-8
biocViews: Classification, RNASeq, SingleCell, Clustering,
        GeneExpression, ImmunoOncology
RoxygenNote: 7.2.0
Suggests: knitr, rmarkdown, Matrix, testthat, vdiffr
VignetteBuilder: knitr
LazyData: false
BugReports: https://github.com/jdekanter/CHETAH
URL: https://github.com/jdekanter/CHETAH
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:58:40 UTC
RemoteUrl: https://github.com/bioc/CHETAH
RemoteRef: HEAD
RemoteSha: 21dc479e20d3cbcf765c6b39ba462a929c0f81e1
NeedsCompilation: no
Packaged: 2026-05-16 09:16:42 UTC; root
Author: Jurrian de Kanter [aut, cre],
  Philip Lijnzaad [aut]
Maintainer: Jurrian de Kanter <jurriandekanter@gmail.com>
Built: R 4.6.0; ; 2026-05-16 09:18:16 UTC; windows
