Package: ASICS
Type: Package
Title: Automatic Statistical Identification in Complex Spectra
Version: 2.29.0
Authors@R: c(
    person("Gaëlle", "Lefort", email = "gaelle.lefort@inrae.fr", role = c("aut", "cre")),
    person("Rémi", "Servien", email = "remi.servien@inrae.fr", role = "aut"),
    person("Patrick", "Tardivel", role = "aut"),
    person("Nathalie", "Vialaneix", email = "nathalie.vialaneix@inrae.fr", role = "aut"))
Description: With a set of pure metabolite reference spectra, ASICS
        quantifies concentration of metabolites in a complex spectrum.
        The identification of metabolites is performed by fitting a
        mixture model to the spectra of the library with a sparse
        penalty. The method and its statistical properties are
        described in Tardivel et al. (2017)
        <doi:10.1007/s11306-017-1244-5>.
Depends: R (>= 3.5)
Imports: BiocParallel, ggplot2, glmnet, grDevices, gridExtra, methods,
        mvtnorm, PepsNMR, plyr, quadprog, ropls, stats,
        SummarizedExperiment, utils, Matrix, zoo
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Suggests: knitr, rmarkdown, BiocStyle, testthat, ASICSdata
VignetteBuilder: knitr
Collate: 'ASICS.R' 'Spectra-class.R' 'ASICSResults-class.R'
        'AnalysisResults-class.R' 'PureLibrary-class.R' 'alignment.R'
        'analysis_on_quantification.R' 'concentration_optimisation.R'
        'data.R' 'library_transformation.R' 'load_data.R'
        'plotAlignment.R' 'plot_spectrum.R' 'simulation.R'
        'user_guide.R' 'utils.R'
biocViews: Software, DataImport, Cheminformatics, Metabolomics
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:47:36 UTC
RemoteUrl: https://github.com/bioc/ASICS
RemoteRef: HEAD
RemoteSha: 1d197eb2eacd8e383047e9f23979f4aa09eb8e39
NeedsCompilation: no
Packaged: 2026-05-30 09:41:08 UTC; root
Author: Gaëlle Lefort [aut, cre],
  Rémi Servien [aut],
  Patrick Tardivel [aut],
  Nathalie Vialaneix [aut]
Maintainer: Gaëlle Lefort <gaelle.lefort@inrae.fr>
Built: R 4.6.0; ; 2026-05-30 10:04:16 UTC; windows
