bimodal_dataset         Bimodal toy dataset
flat_dataset            Flat (null-expression) toy dataset
gradient_dataset        Gradient-topology toy dataset
hub_dataset             Hub-topology toy dataset
levi                    levi
leviAdjustPathways      Adjust regional LEVI results across pathways or
                        networks
leviBulkGraphInference
                        Bulk RNA-seq graph-cluster inference
leviDiff                leviDiff
leviEnrich              leviEnrich
leviFromBioc            leviFromBioc
leviFromDESeq2          leviFromDESeq2
leviFromEdgeR           leviFromEdgeR
leviFromEdges           leviFromEdges
leviFromExpressionSet   leviFromExpressionSet
leviFromLimma           leviFromLimma
leviFromSE              leviFromSE
leviFromSeurat          leviFromSeurat
leviFromSTRING          leviFromSTRING
leviGraphClusterInference
                        Graph-connected cluster-mass inference from
                        biological replicates
leviGraphGetisOrd       Getis-Ord hotspots and coldspots on a
                        biological graph
leviGraphMoran          Moran global and local autocorrelation on a
                        biological graph
leviGraphRewiringInference
                        Degree-preserving rewiring test for graph
                        clusters
leviGraphSpectrum       Laplacian smoothness and graph-Fourier
                        low-frequency energy
leviGraphTFCEFreedmanLane
                        Graph TFCE with Freedman-Lane residual
                        permutation
leviGraphTFCEInference
                        Threshold-free graph-cluster enhancement with
                        sample-label inference
leviGraphTFCERewiring   Degree-preserving rewiring sensitivity test for
                        graph TFCE
leviGraphWeightedTopology
                        Weighted Moran and Laplacian statistics for
                        scored biological interactions
leviGrid                leviGrid
leviPseudobulk          Aggregate single-cell counts to pseudobulks
leviRegionGenes         Attribute a LEVI region to nearby network genes
leviReplicateInference
                        Regional inference from biological replicates
leviSave3D              Save the 3D landscape surface from a chosen
                        viewpoint
leviSingleCellGraphInference
                        Single-cell pseudobulk graph-cluster inference
leviSingleCellInteractionTFCE
                        Cell-type-specific condition interaction with
                        joint graph TFCE inference
leviSingleCellRegionalInference
                        Joint regional inference for paired single-cell
                        pseudobulks
leviSingleCellTFCEInference
                        Cell-type-specific TFCE inference for
                        pseudobulk single-cell RNA-seq
leviSingleCellTopologyInference
                        Run Moran, Laplacian/Fourier and rewiring tests
                        per cell type
LEVIui                  LEVIui - Interactive Shiny GUI for levi
logfc_dataset           Log2-intensity (logfc-mode) toy dataset
multicomp_dataset       Multi-comparison toy dataset
print.levi_result       Print a levi result
readExpColumn           readExpColumn - Define expression comparisons
                        for levi
sparse_dataset          Sparse-expression toy dataset
