Package: fcScan
Type: Package
Title: fcScan for detecting clusters of coordinates with user defined
        options
Version: 1.25.0
biocViews: GenomeAnnotation, Clustering
Authors@R: c(
    person("Abdullah", "El-Kurdi", email="ak161@aub.edu.lb", role = c("aut")),
    person("Ghiwa", "khalil", email="gk39@aub.edu.lb", role=c("aut")),
    person("Georges", "Khazen" ,email="gkhazen@lau.edu.lb", role=c("ctb")),
    person("Pierre", "Khoueiry", email="pk17@aub.edu.lb", role=c("aut","cre")))
Maintainer: Pierre Khoueiry <pk17@aub.edu.lb> Abdullah El-Kurdi
 <ak161@aub.edu.lb>
Description: This package is used to detect combination of genomic
        coordinates falling within a user defined window size along
        with user defined overlap between identified neighboring
        clusters. It can be used for genomic data where the clusters
        are built on a specific chromosome or specific strand.
        Clustering can be performed with a "greedy" option allowing
        thus the presence of additional sites within the allowed window
        size.
License: Artistic-2.0
Encoding: UTF-8
Imports: stats, plyr, VariantAnnotation, SummarizedExperiment,
        rtracklayer, GenomicRanges, methods, IRanges, foreach,
        doParallel, parallel
VignetteBuilder: knitr
Suggests: RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
RoxygenNote: 6.1.0
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:53:36 UTC
RemoteUrl: https://github.com/bioc/fcScan
RemoteRef: HEAD
RemoteSha: 5da32a80c6163b8183b2f26e0bb462e1a0bdfa34
NeedsCompilation: no
Packaged: 2026-01-09 21:14:20 UTC; root
Author: Abdullah El-Kurdi [aut],
  Ghiwa khalil [aut],
  Georges Khazen [ctb],
  Pierre Khoueiry [aut, cre]
Built: R 4.6.0; ; 2026-01-09 21:33:44 UTC; unix
