Automated gating pipeline for flow cytometry analysis to
characterize the lineage, differentiation, and functional
states of T-cells
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Documentation for package ‘staRgate’ version 0.99.6
Help Pages
| getBiexpTransformGS | Applies Biexpeonential Transformation using specifications in csv file provided at 'path_biexp_params' |
| getCompGS | Applies Compensation using specifications in csv file provided at 'path_comp_mat' |
| getDensityGates | Density gating of intensity values in 'marker' for each unique subset of 'subset_col' |
| getGatedDat | Attach indicator columns to 'intens_dat' based on gates provided in 'cutoffs' |
| getPerc | Calculate the percentage of positive cells for specific subpopulations |