Package: rifiComparative
Title: 'rifiComparative' compares the output of rifi from two different
        conditions.
Version: 1.11.0
Authors@R: c(person("Loubna", "Youssar",
      email = "lyoussar@gmail.com",
      role = c("aut", "cre")),
      person("Jens", "Georg",
      email = "jens.georg@biologie.uni-freiburg.de",
      role = "aut", "cre"))
Description: 'rifiComparative' is a continuation of rifi package. It
        compares two conditions output of rifi using half-life and mRNA
        at time 0 segments. As an input for the segmentation, the
        difference between half-life of both condtions and log2FC of
        the mRNA at time 0 are used. The package provides segmentation,
        statistics, summary table, fragments visualization and some
        additional useful plots for further anaylsis.
Depends: R (>= 4.2)
Imports: cowplot, doMC, parallel, dplyr, egg, foreach, ggplot2,
        ggrepel, graphics, grDevices, grid, methods, nnet, rlang,
        S4Vectors, scales, stats, stringr, tibble, rtracklayer, utils,
        writexl, DTA, LSD, reshape2, devtools, SummarizedExperiment
Suggests: DescTools, knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
biocViews: RNASeq, DifferentialExpression, GeneRegulation,
        Transcriptomics, Microarray, Software
BugReports: https://github.com/CyanolabFreiburg/rifiComparative
License: GPL-3 + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Language: en-US
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libfribidi-dev
        git make libharfbuzz-dev libbz2-dev libgit2-dev libicu-dev
        libjpeg-dev liblzma-dev libpng-dev libtiff-dev libwebp-dev
        libxml2-dev libssl-dev libx11-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:20:47 UTC
RemoteUrl: https://github.com/bioc/rifiComparative
RemoteRef: HEAD
RemoteSha: fbe68f4789935303f7cd8f3c9ca9daaa3df0c17b
NeedsCompilation: no
Packaged: 2026-02-02 09:53:32 UTC; root
Author: Loubna Youssar [aut, cre],
  Jens cre Georg [aut]
Maintainer: Loubna Youssar <lyoussar@gmail.com>
Built: R 4.6.0; ; 2026-02-02 10:25:39 UTC; unix
