# Generated by roxygen2: do not edit by hand

S3method(print,levi_result)
export(LEVIui)
export(levi)
export(leviAdjustPathways)
export(leviBulkGraphInference)
export(leviDiff)
export(leviEnrich)
export(leviFromBioc)
export(leviFromDESeq2)
export(leviFromEdgeR)
export(leviFromEdges)
export(leviFromExpressionSet)
export(leviFromLimma)
export(leviFromSE)
export(leviFromSTRING)
export(leviFromSeurat)
export(leviGraphClusterInference)
export(leviGraphGetisOrd)
export(leviGraphMoran)
export(leviGraphRewiringInference)
export(leviGraphSpectrum)
export(leviGraphTFCEFreedmanLane)
export(leviGraphTFCEInference)
export(leviGraphTFCERewiring)
export(leviGraphWeightedTopology)
export(leviGrid)
export(leviPseudobulk)
export(leviRegionGenes)
export(leviReplicateInference)
export(leviSave3D)
export(leviSingleCellGraphInference)
export(leviSingleCellInteractionTFCE)
export(leviSingleCellRegionalInference)
export(leviSingleCellTFCEInference)
export(leviSingleCellTopologyInference)
export(readExpColumn)
importFrom(BiocParallel,
  SerialParam,
  bplapply
)
importFrom(Matrix,sparseMatrix)
importFrom(Rcpp,evalCpp)
importFrom(SummarizedExperiment,
  assay,
  assayNames,
  colData
)
importFrom(ggplot2,
  aes,
  annotate,
  coord_fixed,
  element_text,
  geom_contour,
  geom_raster,
  geom_text,
  ggplot,
  ggtitle,
  guide_colorbar,
  margin,
  scale_fill_gradientn,
  scale_fill_manual,
  theme,
  theme_void
)
importFrom(grDevices,
  cm.colors,
  heat.colors,
  rainbow,
  terrain.colors,
  topo.colors
)
importFrom(grid,
  arrow,
  unit
)
importFrom(igraph,
  as_long_data_frame,
  graph_from_edgelist
)
importFrom(methods,is)
importFrom(reshape2,melt)
importFrom(stats,
  aggregate,
  ave,
  complete.cases,
  na.omit,
  pnorm,
  sd,
  setNames
)
importFrom(utils,
  count.fields,
  head,
  read.delim,
  read.table,
  tail,
  unzip
)
importFrom(xml2,
  read_xml,
  xml_find_all,
  xml_text
)
useDynLib(levi)
