chr_length              Pepper chromosome lengths
gcn                     Simulation of the output list from
                        BioNERO::exp2gcn() with pepper data
gene_ranges             Genomic coordinates of pepper genes
guides                  Guide genes associated with defense and
                        resistance to oomycetes
hubs                    Example hub genes for the network stored in the
                        gcn object
mine_candidates         Mine high-confidence candidate genes in a
                        single step
mine_step1              Step 1: Get all putative candidate genes for a
                        given sliding window
mine_step2              Step 2: Get candidates in modules enriched in
                        guide genes
mine_step3              Step 3: Select candidates based on gene
                        significance
mine2                   Example output from mine_step2()
mined_candidates        Example output from mined_candidates()
pepper_se               Gene expression data from Kim et al., 2018.
plot_snp_circos         Circos plot of SNP distribution across
                        chromosomes
plot_snp_distribution   Plot a barplot of SNP distribution across
                        chromosomes
score_genes             Score candidate genes and select the top n
                        genes
simulate_windows        Simulate number of genes for each sliding
                        window
snp_pos                 Capsicum annuum SNPs associated with resistance
                        to Phytophthora root rot.
tfs                     Pepper transcription factors
