# Generated by roxygen2: do not edit by hand

export(importQFeatures)
export(processQFeatures)
importFrom(DT,
  dataTableOutput,
  datatable,
  renderDataTable
)
importFrom(MsCoreUtils,
  medianPolish,
  robustSummary
)
importFrom(MultiAssayExperiment,
  ExperimentList,
  MultiAssayExperiment,
  getWithColData
)
importFrom(QFeatures,
  QFeatures,
  addAssayLink,
  aggregateFeatures,
  createPrecursorId,
  filterFeatures,
  filterNA,
  getQFeaturesType,
  joinAssays,
  logTransform,
  nNA,
  normalize,
  rbindRowData,
  readQFeatures,
  rowDataNames,
  setQFeaturesType,
  zeroIsNA
)
importFrom(SingleCellExperiment,
  SingleCellExperiment,
  colData
)
importFrom(SummarizedExperiment,
  SummarizedExperiment,
  assay,
  colData,
  rowData
)
importFrom(dplyr,mutate)
importFrom(ggplot2,
  aes,
  annotate,
  geom_boxplot,
  geom_histogram,
  geom_violin,
  geom_vline,
  ggplot,
  scale_x_continuous
)
importFrom(htmltools,
  HTML,
  br,
  div,
  h2,
  h3,
  includeCSS,
  p,
  span,
  tagList,
  tags
)
importFrom(matrixStats,colMedians)
importFrom(methods,
  as,
  is
)
importFrom(nipals,nipals)
importFrom(plotly,
  "%>%",
  add_annotations,
  add_histogram,
  add_trace,
  config,
  ggplotly,
  hide_colorbar,
  layout,
  plot_ly,
  plotlyOutput,
  plotly_build,
  renderPlotly
)
importFrom(rmarkdown,render)
importFrom(shiny,
  NS,
  actionButton,
  addResourcePath,
  checkboxInput,
  column,
  downloadButton,
  downloadHandler,
  eventReactive,
  fileInput,
  fluidRow,
  icon,
  invalidateLater,
  is.reactive,
  isolate,
  modalButton,
  modalDialog,
  moduleServer,
  numericInput,
  observe,
  observeEvent,
  onStop,
  outputOptions,
  p,
  plotOutput,
  reactive,
  reactiveVal,
  reactiveValues,
  reactiveValuesToList,
  removeModal,
  renderText,
  renderUI,
  req,
  runApp,
  selectInput,
  selectizeInput,
  shinyApp,
  showModal,
  showNotification,
  tagAppendAttributes,
  tagList,
  tags,
  textInput,
  textOutput,
  uiOutput,
  updateSelectInput,
  updateSelectizeInput,
  updateTextInput,
  verbatimTextOutput
)
importFrom(shinyFeedback,
  feedbackDanger,
  useShinyFeedback
)
importFrom(shinyalert,
  shinyalert,
  useShinyalert
)
importFrom(shinydashboard,
  dashboardBody,
  dropdownMenu,
  dropdownMenuOutput,
  infoBox,
  infoBoxOutput,
  menuItem,
  menuItemOutput,
  menuSubItem,
  renderInfoBox,
  renderMenu,
  sidebarMenu,
  tabItem,
  tabItems,
  updateTabItems
)
importFrom(shinydashboardPlus,
  box,
  boxSidebar,
  dashboardHeader,
  dashboardPage,
  dashboardSidebar
)
importFrom(shinyjs,
  disabled,
  enable,
  hidden,
  show,
  useShinyjs
)
importFrom(stats,
  as.formula,
  na.exclude
)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,pivot_longer)
importFrom(utils,
  data,
  read.table,
  zip
)
importFrom(waiter,
  Waiter,
  spin_fading_circles,
  useWaiter
)
