Haber2017               Count matrices of intestinal epithelial
                        scRNA-seq data from three conditions
Kang2017                Count matrices of 8 pooled lupus patient
                        samples within two conditions
Ren2021                 Count matrix and metadata of a large COVID-19
                        scRNA-seq data cohort.
create_simMat           Generate similarity matrix with uniform
                        confusion rate to none-self clusters
dcats_GLM               A Generalised linear model based likelihood
                        ratio testing
detect_reference        Calculate a global phi for all cell types
getPhi                  Calculate a global phi for all cell types
knn_simMat              Calculate stochastic transition matrix between
                        clusters from a KNN connection matrix
multinom_EM             An EM algorithm to fit a multinomial with
                        maximum likelihood
simulation              Simulated dataset with two conditions
simulator_base          Composition size simulator
svm_simMat              Calculate stochastic transition matrix between
                        clusters from a data frame including
                        information about clustering
