multiWGCNA

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Documentation for package ‘multiWGCNA’ version 1.9.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

bidirectionalBestMatches	Best matching modules
BuildTOMFlowDF	BuildTOMFlowDF
cleanDatExpr	cleanDatExpr
coexpressionLineGraph	Coexpression Line Graph
computeOverlapsFromWGCNA	computeOverlapsFromWGCNA
constructNetworks	constructNetworks: Construct all the weighted gene correlation networks
diffCoexpression	Differential co-expresison analysis
diffModuleExpression	Differential module expression
drawMultiWGCNAnetwork	Draw multiWGCNA network
GetDatExpr	Get expression data
getModule	name: Name of WGCNAobject
getPreservation	getPreservation
GetSignificantOverlap	Get significant overlap
iterate	iterate: Iterate function across networks
makeTraitTable	Generate a trait table from a sample table
makeTraitTable2	Generate a trait table from a sample table (version 2)
moduleComparisonPlot	Module comparison plot
moduleExpressionPlot	Plots an expression profile for a module
ModuleFlowPlot	Module sankey diagram
ModuleFlowPlot2Way	Module sankey diagram
moduleToModuleHeatmap	Module to module heatmap
name	name: Name of WGCNAobject
overlapComparisons	Overlap comparisons
performANOVA	Perform ANOVA
permutationTestResults	Permutation test results
PlotMultiNodesTOMflow	PlotMultiNodesTOMflow
preservationComparisonPlot	Preservation Comparison Scatterplot
preservationComparisons	Preservation comparisons
PreservationPermutationTest	PreservationPermutationTest
PreservationScoreDistribution	PreservationScoreDistribution
runDME	Run differential module expression
summarizeResults	summarizeResults: Summarize results from a results list object
TOMFlowPlot	TOMFlowPlot
topNGenes	topNGenes: Top N genes of a module
WGCNA-class	The WGCNA Class