Disease Ontology Semantic and Enrichment analysis

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Documentation for package ‘DOSE’ version 4.5.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

clusterSim	clusterSim
computeIC	compute information content
DataSet	Datasets
DGN_EXTID2PATHID	Datasets
DGN_PATHID2EXTID	Datasets
DGN_PATHID2NAME	Datasets
doseSim	doseSim
dose_params	Shared parameters for DOSE functions
doSim	doseSim
enrichDGN	Enrichment analysis based on the DisGeNET (<http://www.disgenet.org/>)
enrichDGNv	enrichDGN
enrichDO	DO Enrichment Analysis
enrichNCG	enrichNCG
gene2DO	convert Gene ID to DO Terms
geneList	Datasets
geneSim	geneSim
gseDGN	DisGeNET Gene Set Enrichment Analysis
gseDO	DO Gene Set Enrichment Analysis
gseNCG	NCG Gene Set Enrichment Analysis
mclusterSim	mclusterSim
NCG_EXTID2PATHID	Datasets
NCG_PATHID2EXTID	Datasets
NCG_PATHID2NAME	Datasets
simplot	simplot
theme_dose	theme_dose
VDGN_EXTID2PATHID	Datasets
VDGN_PATHID2EXTID	Datasets
VDGN_PATHID2NAME	Datasets