Package: CAGEWorkflow
Type: Package
Title: A step-by-step guide to analyzing CAGE data using R/Bioconductor
Version: 1.27.0
Authors@R: person("Malte", "Thodberg", email = "maltethodberg@gmail.com", role = c("aut", "cre"))
Description: Workflow for analyzing Cap Analysis of Gene Expression (CAGE) data using R/Bioconductor.
License: GPL-3
Encoding: UTF-8
Depends: R (>= 3.6.0), CAGEfightR, nanotubes
Suggests: knitr, magick, rmarkdown, BiocStyle, BiocWorkflowTools,
        pheatmap, ggseqlogo, viridis, magrittr, ggforce, ggthemes,
        tidyverse, dplyr, GenomicRanges, SummarizedExperiment,
        GenomicFeatures, BiocParallel, InteractionSet, Gviz, DESeq2,
        limma, edgeR, statmod, BiasedUrn, sva, TFBSTools, motifmatchr,
        pathview, BSgenome.Mmusculus.UCSC.mm9,
        TxDb.Mmusculus.UCSC.mm9.knownGene, org.Mm.eg.db, JASPAR2016,
        png
VignetteBuilder: knitr
Workflow: true
RoxygenNote: 7.1.2
biocViews: GeneExpressionWorkflow, AnnotationWorkflow
git_url: https://git.bioconductor.org/packages/CAGEWorkflow
git_branch: devel
git_last_commit: 234feba
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
Date/Publication: 2025-11-07
NeedsCompilation: no
Packaged: 2025-11-07 18:11:50 UTC; biocbuild
Author: Malte Thodberg [aut, cre]
Maintainer: Malte Thodberg <maltethodberg@gmail.com>
