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This is the development version of nanotubes; for the stable release version, see nanotubes.

Mouse nanotube CAGE data

Bioconductor version: Development (3.20)

Cap Analysis of Gene Expression (CAGE) data from "Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo" by Bornholdt et al. supplied as CAGE Transcription Start Sites (CTSSs).

Author: Malte Thodberg

Maintainer: Malte Thodberg <maltethodberg at>

Citation (from within R, enter citation("nanotubes")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

nanotubes HTML R Script
Reference Manual PDF


biocViews ExperimentData, ExpressionData, SequencingData
Version 1.21.0
License GPL-3
Depends R (>= 3.6)
System Requirements
Bug Reports
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Suggests knitr, rmarkdown, BiocStyle, GenomicRanges, rtracklayer, CAGEfightR
Linking To
Depends On Me CAGEWorkflow
Imports Me
Suggests Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nanotubes_1.21.0.tar.gz
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macOS Binary (x86_64)
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Source Repository (Developer Access) git clone
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