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macrophage

This is the development version of macrophage; for the stable release version, see macrophage.

Human macrophage immune response


Bioconductor version: Development (3.20)

This package provides the output of running Salmon on a set of 24 RNA-seq samples from Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", published in Nature Genetics, January 2018. For details on version numbers and how the samples were processed see the package vignette.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("macrophage")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("macrophage")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("macrophage")
Salmon quantifications for human macrophage immune response experiment HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, RNASeqData, SequencingData
Version 1.21.0
License GPL (>= 2)
Depends R (>= 3.5.0)
Imports
System Requirements
URL
See More
Suggests knitr, markdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me fishpond, GeDi, GeneTonic, mosdef, quantiseqr, fluentGenomics
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package macrophage_1.21.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/macrophage
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/macrophage
Package Short Url https://bioconductor.org/packages/macrophage/
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