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fourDNData

This is the development version of fourDNData; for the stable release version, see fourDNData.

4DN data package


Bioconductor version: Development (3.20)

fourDNData is a data package giving programmatic access to Hi-C contact matrices uniformly processed by the [4DN consortium](https://www.4dnucleome.org/). The matrices are available in the multi-resolution `.mcool` format.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Citation (from within R, enter citation("fourDNData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("fourDNData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fourDNData")
fourDNData HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews ExperimentData, SequencingData
Version 1.5.0
License MIT + file LICENSE
Depends R (>= 4.2)
Imports BiocFileCache, HiCExperiment, GenomicRanges, IRanges, S4Vectors, utils, tools
System Requirements
URL https://github.com/js2264/fourDNData
Bug Reports https://github.com/js2264/fourDNData/issues
See More
Suggests rtracklayer, dplyr, testthat, methods, BiocStyle, knitr, rmarkdown
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Depends On Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package fourDNData_1.5.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/fourDNData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/fourDNData
Package Short Url https://bioconductor.org/packages/fourDNData/
Package Downloads Report Download Stats