Registration Open for Bioc2024
Early registration discount pricing ends May 31!

RcisTarget.hg19.motifDBs.cisbpOnly.500bp

This is the development version of RcisTarget.hg19.motifDBs.cisbpOnly.500bp; for the stable release version, see RcisTarget.hg19.motifDBs.cisbpOnly.500bp.

RcisTarget motif databases for human (hg19) - Subset of 4.6k motifs


Bioconductor version: Development (3.20)

RcisTarget databases: Gene-based motif rankings and annotation to transcription factors. This package contains a subset of 4.6k motifs (cisbp motifs), scored only within 500bp upstream and the TSS. See RcisTarget tutorial to download the full databases, containing 20k motifs and search space up to 10kbp around the TSS.

Author: Sara Aibar, Gert Hulselmans, Stein Aerts. Laboratory of Computational Biology, KU Leuven Center for Human Genetics. Leuven, Belgium.

Maintainer: Sara Aibar <sara.aibar at kuleuven.vib.be>

Citation (from within R, enter citation("RcisTarget.hg19.motifDBs.cisbpOnly.500bp")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RcisTarget.hg19.motifDBs.cisbpOnly.500bp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, Homo_sapiens_Data
Version 1.25.0
License GPL-3
Depends R (>= 3.3)
Imports data.table
System Requirements
URL http://scenic.aertslab.org
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me RcisTarget
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RcisTarget.hg19.motifDBs.cisbpOnly.500bp_1.25.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp
Package Short Url https://bioconductor.org/packages/RcisTarget.hg19.motifDBs.cisbpOnly.500bp/
Package Downloads Report Download Stats