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PCHiCdata

This is the development version of PCHiCdata; for the stable release version, see PCHiCdata.

Promoter Capture Hi-C data


Bioconductor version: Development (3.20)

Subsets of Promoter Capture Hi-C data conveniently packaged for Chicago users. Data includes interactions detected for chromosomes 20 and 21 in GM12878 cells and for chromosomes 18 and 19 in mESC.

Author: Paula Freire-Pritchett, Jonathan Cairns, Steven Wingett, Mikhail Spivakov

Maintainer: Mikhail Spivakov <mikhail.spivakov at lms.mrc.ac.uk>

Citation (from within R, enter citation("PCHiCdata")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("PCHiCdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PCHiCdata")
PCHiCdata Vignette HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, Homo_sapiens_Data, Mus_musculus_Data, SequencingData, StemCell
Version 1.33.0
License Artistic-2.0
Depends R (>= 3.2), Chicago
Imports
System Requirements
URL
See More
Suggests testthat, BiocStyle, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me Chicago
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PCHiCdata_1.33.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/PCHiCdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PCHiCdata
Package Short Url https://bioconductor.org/packages/PCHiCdata/
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