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NGScopyData

This is the development version of NGScopyData; for the stable release version, see NGScopyData.

Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package


Bioconductor version: Development (3.20)

Subset of BAM files of human lung tumor and pooled normal samples by targeted panel sequencing. [Zhao et al 2014. Targeted Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using the University of North Carolina (UNC) Sequencing Assay Captures Most Previously Described Genetic Aberrations in NSCLC. In preparation.] Each sample is a 10 percent random subsample drawn from the original sequencing data. The pooled normal sample has been rescaled accroding to the total number of normal samples in the "pool". Here provided is the subsampled data on chr6 (hg19).

Author: Xiaobei Zhao [aut, cre, cph]

Maintainer: Xiaobei Zhao <xiaobei at binf.ku.dk>

Citation (from within R, enter citation("NGScopyData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("NGScopyData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews CancerData, ExperimentData, LungCancerData, SequencingData
Version 1.25.0
License GPL (>=2)
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Imports
System Requirements
URL http://www.bioconductor.org/packages/release/data/experiment/html/NGScopyData.html
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package NGScopyData_1.25.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/NGScopyData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/NGScopyData
Package Short Url https://bioconductor.org/packages/NGScopyData/
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