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HighlyReplicatedRNASeq

This is the development version of HighlyReplicatedRNASeq; for the stable release version, see HighlyReplicatedRNASeq.

Collection of Bulk RNA-Seq Experiments With Many Replicates


Bioconductor version: Development (3.20)

Gene-level count matrix data for bulk RNA-seq dataset with many replicates. The data are provided as easy to use SummarizedExperiment objects. The source data that is made accessible through this package comes from https://github.com/bartongroup/profDGE48.

Author: Constantin Ahlmann-Eltze [aut, cre]

Maintainer: Constantin Ahlmann-Eltze <artjom31415 at googlemail.com>

Citation (from within R, enter citation("HighlyReplicatedRNASeq")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HighlyReplicatedRNASeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HighlyReplicatedRNASeq")
Exploring the 86 bulk RNA-seq samples from the Schurch et al. (2016) study HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData
Version 1.17.0
License MIT + file LICENSE
Depends SummarizedExperiment, ExperimentHub
Imports S4Vectors
System Requirements
URL https://github.com/const-ae/HighlyReplicatedRNASeq
Bug Reports https://github.com/const-ae/HighlyReplicatedRNASeq/issues
See More
Suggests BiocStyle, BiocFileCache, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HighlyReplicatedRNASeq_1.17.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/HighlyReplicatedRNASeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HighlyReplicatedRNASeq
Package Short Url https://bioconductor.org/packages/HighlyReplicatedRNASeq/
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