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EpiMix.data

This is the development version of EpiMix.data; for the stable release version, see EpiMix.data.

Data for the EpiMix package


Bioconductor version: Development (3.20)

Supporting data for the EpiMix R package. It include: - HM450_lncRNA_probes.rda - HM450_miRNA_probes.rda - EPIC_lncRNA_probes.rda - EPIC_miRNA_probes.rda - EpigenomeMap.rda - LUAD.sample.annotation - TCGA_BatchData - MET.data - mRNA.data - microRNA.data - lncRNA.data - Sample_EpiMixResults_lncRNA - Sample_EpiMixResults_miRNA - Sample_EpiMixResults_Regular - Sample_EpiMixResults_Enhancer - lncRNA expression data of tumors from TCGA that are stored in the ExperimentHub.

Author: Yuanning Zheng [aut, cre]

Maintainer: Yuanning Zheng <eric2021 at stanford.edu>

Citation (from within R, enter citation("EpiMix.data")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("EpiMix.data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EpiMix.data")
vignette HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Genome, RNASeqData
Version 1.7.0
License GPL-3
Depends R (>= 4.2.0), ExperimentHub(>= 0.99.6)
Imports
System Requirements
URL
Bug Reports https://github.com/gevaertlab/EpiMix/issues
See More
Suggests rmarkdown, knitr
Linking To
Enhances
Depends On Me EpiMix
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EpiMix.data_1.7.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/EpiMix.data
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EpiMix.data
Package Short Url https://bioconductor.org/packages/EpiMix.data/
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