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This is the development version of ConnectivityMap; for the stable release version, see ConnectivityMap.

Functional connections between drugs, genes and diseases as revealed by common gene-expression changes

Bioconductor version: Development (3.20)

The Broad Institute's Connectivity Map (cmap02) is a "large reference catalogue of gene-expression data from cultured human cells perturbed with many chemicals and genetic reagents", containing more than 7000 gene expression profiles and 1300 small molecules.

Author: Paul Shannon

Maintainer: Paul Shannon<pshannon at>

Citation (from within R, enter citation("ConnectivityMap")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews CancerData, ExperimentData, MicroarrayData
Version 1.41.0
License GPL-3
Depends R (>= 2.15.1)
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