Registration Open for Bioc2024
Early registration discount pricing ends May 31!

BloodCancerMultiOmics2017

This is the development version of BloodCancerMultiOmics2017; for the stable release version, see BloodCancerMultiOmics2017.

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis


Bioconductor version: Development (3.20)

The package contains data of the Primary Blood Cancer Encyclopedia (PACE) project together with a complete executable transcript of the statistical analysis and reproduces figures presented in the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al., J. Clin. Invest. (2018) 128(1):427-445. doi:10.1172/JCI93801.

Author: Malgorzata Oles, Sascha Dietrich, Junyan Lu, Britta Velten, Andreas Mock, Vladislav Kim, Wolfgang Huber

Maintainer: Malgorzata Oles <dr.malgorzata.oles at gmail.com>

Citation (from within R, enter citation("BloodCancerMultiOmics2017")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BloodCancerMultiOmics2017")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BloodCancerMultiOmics2017")
BloodCancerMultiOmics2017 HTML R Script
BloodCancerMultiOmics2017 - data overview HTML R Script
Reference Manual PDF

Details

biocViews CancerData, ExperimentData, LeukemiaCancerData, ReproducibleResearch
Version 1.25.0
License LGPL (>= 3)
Depends R (>= 3.5.0)
Imports beeswarm, Biobase, DESeq2, devtools, dplyr, ggdendro, ggplot2, glmnet, graphics, grDevices, grid, gtable, ipflasso, methods, RColorBrewer, reshape2, scales, stats, SummarizedExperiment, survival, tibble
System Requirements
URL
See More
Suggests BiocStyle, knitr, rmarkdown, abind, AnnotationDbi, biomaRt, broom, colorspace, cowplot, dendsort, doParallel, foreach, forestplot, genefilter, ggbeeswarm, ggtern, gridExtra, hexbin, IHW, limma, magrittr, Matrix, maxstat, nat, org.Hs.eg.db, pheatmap, piano, readxl, Rtsne, tidyr, xtable
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BloodCancerMultiOmics2017_1.25.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/BloodCancerMultiOmics2017
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BloodCancerMultiOmics2017
Package Short Url https://bioconductor.org/packages/BloodCancerMultiOmics2017/
Package Downloads Report Download Stats