illuminaHumanv2BeadID.db
This is the development version of illuminaHumanv2BeadID.db; for the stable release version, see illuminaHumanv2BeadID.db.
Illumina HumanWGv2 annotation data (chip illuminaHumanv2BeadID)
Bioconductor version: Development (3.24)
Illumina HumanWGv2 annotation data (chip illuminaHumanv2BeadID) assembled using data from public repositories to be used with data summarized from bead-level data with numeric ArrayAddressIDs as keys. Illumina probes with a No match or Bad quality score were removed prior to annotation. See http://www.compbio.group.cam.ac.uk/Resources/Annotation/index.html and Barbosa-Morais et al (2010) A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data. Nucleic Acids Research.
Author: Mark Dunning, Matt Ritchie, Nuno Barbosa-Morais
Maintainer: Mark Dunning <mark.dunning at cancer.org.uk>
citation("illuminaHumanv2BeadID.db")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("illuminaHumanv2BeadID.db")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Homo_sapiens, IlluminaChip, illuminaHumanv2BeadID |
| Version | 1.8.0 |
| License | Artistic-2.0 |
| Depends | R (>= 2.7.0), methods, AnnotationDbi(>= 1.11.8), org.Hs.eg.db(>= 2.4.5) |
| Imports | methods, AnnotationDbi |
| System Requirements | |
| URL |
See More
| Suggests | annotate |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | illuminaHumanv2BeadID.db_1.8.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/illuminaHumanv2BeadID.db/ |
| Package Downloads Report | Download Stats |