print {siggenes}R Documentation

FindA0 specific print method


Prints the numbers of differentially expressed genes and the estimated FDRs for a set of possible values for the fudge factor in an Empirical Bayes Analysis of Microarrays.


  print(x, delta = NULL)


x a FindA0 object
delta a numeric value between 0 and 1 specifying the minimum posterior probability for a gene to be called differentially expressed. If NULL, the value of delta is used that has been specified when generating the FindA0 object specified by x


Holger Schwender,


Efron, B., Tibshirani, R., Storey, J.D. and Tusher, V. (2001). Empirical Bayes Analysis of a Microarray Experiment, JASA, 96, 1151-1160.

Schwender, H., Krause, A. and Ickstadt, K. (2003). Comparison of the Empirical Bayes and the Significance Analysis of Microarrays. Technical Report, SFB 475, University of Dortmund, Germany.