The R markdown is available from the pulldown menu for Code at the upper-right, choose “Download Rmd”, or download the Rmd from GitHub.

1 Why use Jupyter Bridge

  • Users do not need to worry about dependencies and environment.
  • Easily share notebook-based workflows and data sets
  • Workflows can reside in the cloud, access cloud resources, and yet still use Cytoscape features.

2 How Jupyter Bridge works

Jupyter-Bridge enables a workflow running on remote Jupyter to execute functions on a PC-local Cytoscape – the remote Jupyter runs the request through Jupyter-Bridge, where it is picked up by Javascript code running on the Jupyter web page in the PC-local browser, which in turn calls Cytoscape. The Cytoscape response travels the reverse route.