# Generated by roxygen2: do not edit by hand

export(ARA)
export(GIoperator)
export(GRoperator)
export(addArrowMark)
export(addGuideLine)
export(addInteractionAnnotation)
export(browseTracks)
export(browseTracksOutput)
export(coverageGR)
export(dandelion.plot)
export(geneModelFromTxdb)
export(geneTrack)
export(getCurTrackViewport)
export(getGeneIDsFromTxDb)
export(getLocation)
export(gi2track)
export(gieStain)
export(ideogramPlot)
export(importBam)
export(importData)
export(importGInteractions)
export(importScore)
export(listChromosomes)
export(listNormalizations)
export(listResolutions)
export(loadIdeogram)
export(lolliplot)
export(optimizeStyle)
export(parse2GRanges)
export(parseWIG)
export(plotGRanges)
export(renderbrowseTracks)
export(trackList)
export(trackViewerStyle)
export(viewGene)
export(viewTracks)
exportClasses(pos)
exportClasses(track)
exportClasses(trackList)
exportClasses(trackStyle)
exportClasses(trackViewerStyle)
exportClasses(xscale)
exportClasses(yaxisStyle)
exportMethods("$")
exportMethods("$<-")
exportMethods("seqlevelsStyle<-")
exportMethods(reduce)
exportMethods(seqlevels)
exportMethods(seqlevelsStyle)
exportMethods(setTrackStyleParam)
exportMethods(setTrackViewerStyleParam)
exportMethods(setTrackXscaleParam)
exportMethods(setTrackYaxisParam)
exportMethods(show)
import(GenomicAlignments)
import(GenomicRanges)
import(IRanges)
import(Rsamtools)
import(S4Vectors)
import(grid)
import(htmlwidgets)
import(methods)
importClassesFrom(grImport,Picture)
importFrom(AnnotationDbi,
  columns,
  mapIds,
  mget,
  select
)
importFrom(BiocGenerics,
  basename,
  end,
  start,
  strand
)
importFrom(GenomeInfoDb,
  "seqlevelsStyle<-",
  seqlevelsStyle
)
importFrom(GenomicFeatures,
  cdsBy,
  exonsBy,
  fiveUTRsByTranscript,
  genes,
  threeUTRsByTranscript,
  transcripts
)
importFrom(IRanges,
  Views,
  viewMaxs
)
importFrom(InteractionSet,
  GInteractions,
  "regions<-",
  anchorIds,
  regions
)
importFrom(S4Vectors,
  first,
  second
)
importFrom(Seqinfo,
  "genome<-",
  "seqinfo<-",
  "seqlevels<-",
  Seqinfo,
  genome,
  isCircular,
  seqinfo,
  seqlengths,
  seqlevels,
  seqnames
)
importFrom(grDevices,
  as.raster,
  col2rgb,
  colorRampPalette,
  palette,
  rgb
)
importFrom(grImport,
  grid.picture,
  readPicture
)
importFrom(rhdf5,
  H5Fopen,
  H5close,
  h5closeAll,
  h5ls,
  h5read
)
importFrom(rtracklayer,
  GRangesForUCSCGenome,
  browserSession,
  getTable,
  import,
  ucscTableQuery
)
importFrom(scales,rescale)
importFrom(stats,ksmooth)
importFrom(strawr,
  readHicBpResolutions,
  readHicChroms,
  readHicNormTypes,
  straw
)
importFrom(tools,file_ext)
importFrom(txdbmaker,makeTxDb)
importFrom(utils,
  combn,
  installed.packages
)
importMethodsFrom(GenomicRanges,range)
importMethodsFrom(GenomicRanges,reduce)
