% narspk.bib

% spkTools
@article{mccall2008csa,
  title={{Consolidated strategy for the analysis of microarray spike-in data.}},
  author={McCall, M.N. and Irizarry, R.A.},
  journal={Nucleic Acids Research},
  volume={36},
  number={17},
  pages={e108},
  year={2008}
}

% RMA
@article{irizarry2003sag,
  title={{Summaries of Affymetrix GeneChip probe level data}},
  author={Irizarry, R.A. and Bolstad, B.M. and Collin, F. and Cope, L.M. and Hobbs, B. and Speed, T.P.},
  journal={Nucleic Acids Research},
  volume={31},
  number={4},
  pages={e15},
  year={2003},
  publisher={Oxford Univ Press}
}

%% affycomp
@article{cope2004bag,
  title={{A benchmark for Affymetrix GeneChip expression measures}},
  author={Cope, L.M. and Irizarry, R.A. and Jaffee, H.A. and Wu, Z. and Speed, T.P.},
  journal={Bioinformatics},
  volume={20},
  pages={323-331},
  year={2004},
  publisher={Oxford Univ Press}
}

@article{irizarry2005mlc,
  title={{Multiple-laboratory comparison of microarray platforms}},
  author={Irizarry, R.A. and Warren, D. and Spencer, F. and Kim, I.F. and Biswal, S. and Frank, B.C. and Gabrielson, E. and Garcia, J.G.N. and Geoghegan, J. and Germino, G. and others},
  journal={Nature Methods},
  volume={2},
  number={5},
  pages={345--350},
  year={2005}
}

@article{irizarry2006cag,
  title={{Comparison of Affymetrix GeneChip expression measures}},
  author={Irizarry, R.A. and Wu, Z. and Jaffee, H.A.},
  journal={Bioinformatics},
  volume={22},
  number={7},
  pages={789},
  year={2006},
  publisher={Oxford Univ Press}
}

% bioconductor
@article{BIOC,
  author = {Robert C Gentleman and Vincent J. Carey and Douglas M. Bates and Ben Bolstad and Marcel Dettling and Sandrine Dudoit and Byron Ellis and Laurent Gautier and Yongchao Ge and Jeff Gentry and Kurt Hornik and Torsten Hothorn and Wolfgang Huber and Stefano Iacus and  Rafael Irizarry and Friedrich Leisch and Cheng Li and Martin Maechler and Anthony J. Rossini and Gunther Sawitzki and Colin Smith and Gordon Smyth and Luke Tierney and Jean Y. H. Yang and  Jianhua Zhang}, 
  title = {Bioconductor: Open software development for 
computational biology and bioinformatics},
  journal = {Genome Biology},
  volume = {5},
  year = {2004},
  pages = {R80},
  url = {http://genomebiology.com/2004/5/10/R80}
}

% Rafa's Additional Paper
@article{irizarry2006fle,
   title={{Feature-level exploration of a published Affymetrix GeneChip
control dataset}},
   author={Irizarry, R.A. and Cope, L.M. and Wu, Z.},
   journal={Genome Biology},
   volume={7},
   number={8},
   pages={404},
   year={2006}
}

% imbalance measure
@article{wu1981icn,
  title={{Iterative Construction of Nearly Balanced Assignments I: Categorical Covariates}},
  author={Wu, C.F.},
  journal={Technometrics},
  volume={23},
  number={1},
  pages={37--44},
  year={1981},
  publisher={JSTOR}
}
