8b53b5c045336e904d0f5cfb898615e7 *DESCRIPTION
36311f1217a76ee3494ef69c565008dc *Dockerfile
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
21af11275bce447055d467e44d2381ec *NAMESPACE
4b6d8d0d64f2d748816287b1bfa473e0 *R/KdModelList.R
2f26d8016b52f7bddc69336bd068f2fa *R/KdModels.R
b69651827b9266d2aefa4e0ea4540160 *R/aggregation.R
851d044178f742638f7cb59866a5ed44 *R/data.R
a75e725482c5b33b28dfc9f60f1aed90 *R/misc.R
7a3f8b51ac6a7ea390c3fd7451301f57 *R/plotting.R
7bc6644b9b6dc938958ff96ca9515a00 *R/scanning.R
dc0dc413fbb524ef5835beca1114bbb1 *README.md
52fdd9db027317a43693e081a4fe6781 *build/vignette.rds
c44110bd0129e637fc31b6eb8fa73fa4 *data/SampleKdModel.RData
1777d53b8503874ea578f65aa7ff22d9 *data/SampleTranscript.RData
123f5bb8d2f3719b66132502c949a601 *inst/CITATION
3e0f2a2255b6825bb0fa4b3eb2eccc11 *inst/NEWS
312aca793fd87e65181f4096d48a9118 *inst/doc/Kdmodels.R
78a6d484d7aa6ade4cfd519c6bb58662 *inst/doc/Kdmodels.Rmd
acd3216791848eaaa4a73d2c0db8a70a *inst/doc/Kdmodels.html
8c2cda42df432c5f4be27bd90576fb59 *inst/doc/scanning.R
b592e7479dccdcd6930ba4d1b84c2f03 *inst/doc/scanning.Rmd
85788098f302cb4290cdaecf33b7b58d *inst/doc/scanning.html
47c62c233eab0796dfb4b52f9e0d75ac *inst/docs/12mer.png
3c8c2e530c8242750c150030089ad2c9 *inst/docs/sitetypes.jpg
5ca586631c4df1be50d8e1d895be718f *inst/docs/sticker.svg
0ae82b56c0d58fadafbda2274fd27839 *man/KdModel.Rd
6d253891c41b341e55b26509002b6a8b *man/KdModelList-methods.Rd
964c8a4ed23f437f2712ecbcd7181c96 *man/KdModelList.Rd
5d3ee524db4172bc2f89a9af1ddd6309 *man/SampleKdModel.Rd
a98eb48f9a6f27d565a3aeacb63c8dbe *man/SampleTranscript.Rd
c714add00547c296ed39341e3893dbc0 *man/aggregateMatches.Rd
d44236e72e8fbefdadd1957ffbba22ae *man/assignKdType.Rd
96ddbe08fd0d6dc2709c677a13a7e9a2 *man/conservation.Rd
7443c706a3afa2f0d115f2adb1a7e6f0 *man/dummyKdData.Rd
3b691df7dd3c0fa58a3beb9bb33b3761 *man/findSeedMatches.Rd
ccd061e08e33d518c642ed3328346e6e *man/get3pAlignment.Rd
7d77577c46600176febd4df758143aa4 *man/get8merRange.Rd
a5f317ad5c1136edbf4f8aee12754c05 *man/getKdModel.Rd
e9ba6760585fcb2bd871503c80bb9f00 *man/getKmers.Rd
e0801736de68f4246cfcc0f7feace376 *man/getMatchTypes.Rd
c487adc638d59090a424ade1ec4e807f *man/getRandomSeq.Rd
91b0b47af033043f469741c01db0dd3a *man/getSeed8mers.Rd
f44e3debaf7458c8c8166a628a51ebde *man/plotKdModel.Rd
5b84d70b18ace569b929e18786a10c7b *man/removeOverlappingRanges.Rd
f9e4dbef94768594c402a6d23adf4a13 *man/viewTargetAlignment.Rd
ed7a8a66fb651db4cf950e2cae32a3f7 *tests/testthat.R
f24c62b255774ca3594edbfcd2b604c6 *tests/testthat/test-KdModels.R
e0de90670857ffe31108582d049fe719 *tests/testthat/test-aggregation.R
b455a42ecfa7ee34beb9fa2c0091db88 *tests/testthat/test-scanning.R
78a6d484d7aa6ade4cfd519c6bb58662 *vignettes/Kdmodels.Rmd
b592e7479dccdcd6930ba4d1b84c2f03 *vignettes/scanning.Rmd
