Function reference • protGear

# Reference

## All functions
`array_vars()` | List the array structure variables
`best_CV_estimation()` | best CV estimation
`bg_correct()` | bg_correct
`buffer_spots()` | Extract buffer spots of data
`check_sampleID_files()` | \\_End_Function_\\ # Check existing sample ID names
`create_dir()` | Title Create directory function
`cv_by_sample_estimation()` | cv by sample
`cv_estimation()` | cv_estimation
`extract_bg()` | extract bg
`launch_protGear_interactive()` | launch_protGear_interactive
`launch_select()` | launch_select
`matrix_normalise()` | Normalize Arrays
`merge_sampleID()` | Merge sample ID with the array data
`minpositive()` | Get the minimum positive value
`name_of_files()` | Object names of a list
`output_trend_stats()` | Trend test using Cox–Stuart (C–S) and Mann–Kendall (M–K) trend tests
`plot_bg()` | Plot background
`plot_buffer()` | Plot the buffer values
`plot_FB()` | plot_FB
`plot_normalised()` | Comparison of normalised data by sample
`plot_normalised_antigen()` | Comparison of normalised data by feature
`read_array_files()` | Read array files
`read_array_visualize()` | Read a gpr file to visualize
`rlm_normalise_matrix()` | Nomrmalise using RLM
`tag_subtract()` | tag_subtract
`visualize_slide()` | Visualize the slide mimicking the original scan image.
`visualize_slide_2d()` | Visualize the slide mimicking the original scan image using a 2d plot.