Visualize the slide mimicking the original scan image. — visualize_slide • protGear

# Visualize the slide mimicking the original scan image.

Source: `R/read_files_functions.R`
`visualize_slide.Rd`

Visualize the slide mimicking the original scan image.

    visualize_slide(infile, MFI_var, interactive = FALSE, d_f = NA)

## Arguments

infile

  a .gpr file to be used to visualize the expression intensities of the slide spots

MFI_var

  the MFI variable to plot, can be either the background or foreground value

interactive

  a logical to specify whether an interactive graph is returned or not

d_f

  a data frame with array data

## Value

A ggplot of slide foreground values

## Examples

    ## Not run:
    visualize_slide(
    infile = system.file("extdata", "/array_data/machine1/KK2-06.txt",
     package="protGear"),
    MFI_var = "B635 Median"
    )

    ## End(Not run)