plot_FB — plot_FB • protGear
Description: A generic function for plotting the background and foreground values.

# plot_FB

Source: `R/read_files_functions.R`
`plot_FB.Rd`

A generic function for plotting the background and foreground values.

    plot_FB(
      df,
      antigen_name = "antigen",
      bg_MFI = "BG_Median",
      FG_MFI = "FBG_Median",
      log_mfi = FALSE
    )

## Arguments

df

  An object containing the data to which the plot is done.

antigen_name

  The `variable` describing which features/proteins/ antibodies in the data should be used to plot

bg_MFI

  A numeric `variable` describing which is the background MFI

FG_MFI

  A numeric `variable` describing which is the foreground MFI

log_mfi

  a logical value indicating whether the MFI values should be log transformed or not.

## Value

a ggplot of foreground vs background MFI values

## Details

Plot foreground and background values

## Examples

    ## Not run:
    #After extracting the background using \code{\link{extract_bg}}
    #we plot the data using
    allData_bg <- readr::read_csv(system.file("extdata",
    "bg_example.csv", package="protGear"))
    #> Rows: 126 Columns: 6
    #> ── Column specification ────────────────────────────────────────────────────────
    #> Delimiter: ","
    #> chr (2): sampleID, antigen
    #> dbl (4): Block, FBG_Median, BG_Median, replicate
    #>
    #> ℹ Use `spec()` to retrieve the full column specification for this data.
    #> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
    plot_FB(allData_bg,
    antigen_name = "antigen",
    bg_MFI = "BG_Median", FG_MFI = "FBG_Median", log = FALSE
    )

    ## End(Not run)